rs28257549 SNP Detail

Summary

• ID
  rs28257549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25161192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGAAAA ACTGCAGGTC
  TTCTTACCAA CAGGATATAT GGTAGCTAGC AGACACAGAT CTTGCAAAAC AACCTTTATT
  GAAACACCAG AGGCCATGGG GATGGGCCCT AAGGTTTTGG TTCTGGAGTC AAGATTCTTT
  CTTCAACATG TCTGGCCTGG GGCCCTAGTG GCTGGGGAGA CAAAGTGAGG GGCTCCCACA
  K
  TACTCAGACC AGGACCAGGA CATTCCTGGT AGCCCAAAGG GATTCAGGAG CTTCAGAGAG
  AGGCCCCTCA TGGAGCTGCT CAGGGTCCCC ACAGCACATG TGAGTACGGA GCTGGGAACA
  CCTCTTCCAT TGGACTGTCC TAGGGCTTTT CTTGTCTAGG CAGGTGGAGG TCAGAAATTG
  CCCCTCTGGG CACCAGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37423165	NES08781055	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28257549					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423165	NES08781055	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25161192 () rs orientation: forward

Symbol	Name	Function Class
Anapc2	anaphase promoting complex subunit 2	1298 bp upstream
Cpgi11305	CpG island 11305	536 bp proximal
Rr553042	regulatory region 553042	1226 bp proximal
Ssna1	SS nuclear autoantigen 1	within coordinates
Tprn	taperin	1295 bp downstream
Tssr16691	transcription start site region 16691	1282 bp upstream
Tssr16692	transcription start site region 16692	1295 bp upstream
Tssr16693	transcription start site region 16693	1307 bp upstream
Tssr22958	transcription start site region 22958	1156 bp downstream
Tssr22959	transcription start site region 22959	1200 bp downstream