rs28257554 SNP Detail

Summary

• ID
  rs28257554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25160733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCACAGC TGTTTTCTGG ATCTTTTTGG TCACCAAATA
  CTTCCAAACT TTCCCCAGAA GCTGTGACAA AGGGCTGGGT CATAGGGCAC ATGGAAATAG
  K
  AAGTAAGCAA CACATGTGGT TGGAAGATGG GTCCTAACAG CAGCAGCAGC AGATTGGACC
  AAACAGAACT TACTGTCCCT GTCTCTATCT CTGAGCCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37423170	NES08781050	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28257554					SNP	T	G	G	T	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423170	NES08781050	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25160733 () rs orientation: forward

Symbol	Name	Function Class
Anapc2	anaphase promoting complex subunit 2	1757 bp upstream
Cpgi11305	CpG island 11305	995 bp proximal
Rr553042	regulatory region 553042	1685 bp proximal
Ssna1	SS nuclear autoantigen 1	318 bp downstream
Tprn	taperin	836 bp downstream
Tssr16691	transcription start site region 16691	1741 bp upstream
Tssr16692	transcription start site region 16692	1754 bp upstream
Tssr16693	transcription start site region 16693	1766 bp upstream
Tssr22958	transcription start site region 22958	1615 bp downstream
Tssr22959	transcription start site region 22959	1659 bp downstream