rs28257677 SNP Detail

Summary

• ID
  rs28257677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25116878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACACAAAG AGCTTCCTGG
  GTGTCTTGGA GATGTTTGGG TCCCAAGCTG GGCAGTAAAT ACAAACAACA TAGCAAAAGC
  CCACCAAGGA CAGTGGCTGC CCACAGCTGG CAGGGGAAGA CACTCTAGGT CTTTACTATG
  AATCAAGAGT TCCCCTGTGC CAGTAGGCAA AGGAGACCCA GTATATCAAG AGGTCCTGGA
  R
  CCTATAGCAT GAGAGGGTGT GCATAGAGCT GGCCAGAGGA GCAGAGAAGC AAGGCAGAAC
  GGGCTGTGGG AGCATCGGGT GCCTGCCCTC CCAGCCCAGT CTGCAGCTGT TGGAGGCCGC
  ACAAGGAAGG CTCTGTTTAC TGGTGGCCAT GGTCCCACTG GGAGGGTGCA TTACTGCCAG
  GCAGGAGCAG CAGGCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37423293	NES08765444	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28257677					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423293	NES08765444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25116878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11300	CpG island 11300	1592 bp distal
Gm75683	predicted gene, 75683	within coordinates
Gm75691	predicted gene, 75691	886 bp downstream
Rr372931	regulatory region 372931	1106 bp upstream
Rr553016	regulatory region 553016	1864 bp distal
Rr553017	regulatory region 553017	1068 bp distal
Rr553018	regulatory region 553018	1810 bp distal
Rr553019	regulatory region 553019	1264 bp proximal
Rr553020	regulatory region 553020	1632 bp proximal
Rr553021	regulatory region 553021	1673 bp proximal
Rr553022	regulatory region 553022	1842 bp proximal
Rr553023	regulatory region 553023	1941 bp proximal
Tssr16666	transcription start site region 16666	1795 bp downstream
Tssr16667	transcription start site region 16667	1491 bp downstream
Tssr16668	transcription start site region 16668	1435 bp downstream
Tssr22951	transcription start site region 22951	1554 bp downstream