rs28257678 SNP Detail

Summary

• ID
  rs28257678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25116629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGGGT AGATCAGGAA
  GGGGGGGCTG AGTTCTGTGA CCACACTGAC AGGACCCATA CATACCTCAG GAGGTTTAAA
  TGTATGTAAG GTACCAGGTC ACTTTTTGGC ATGCTGAAGG TTATCTCAGT ACCTAGAAAT
  ATCTTCTGAG TTAAAGATCC TGGACTCTAC AGAGTAGCTT AGGTGCCAAG ATGTCAACTA
  Y
  TAGAATCTCA TAGCACACAC CTGAGAAGGA AGCAGAAGTT CGGTATTTTA ACACAAAGAG
  CTTCCTGGGT GTCTTGGAGA TGTTTGGGTC CCAAGCTGGG CAGTAAATAC AAACAACATA
  GCAAAAGCCC ACCAAGGACA GTGGCTGCCC ACAGCTGGCA GGGGAAGACA CTCTAGGTCT
  TTACTATGAA TCAAGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37423294	NES08765443	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28257678					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423294	NES08765443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25116629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11300	CpG island 11300	1343 bp distal
Gm75683	predicted gene, 75683	within coordinates
Gm75691	predicted gene, 75691	637 bp downstream
Rr372931	regulatory region 372931	1355 bp upstream
Rr553016	regulatory region 553016	1615 bp distal
Rr553017	regulatory region 553017	819 bp distal
Rr553018	regulatory region 553018	1561 bp distal
Rr553019	regulatory region 553019	1513 bp proximal
Rr553020	regulatory region 553020	1881 bp proximal
Rr553021	regulatory region 553021	1922 bp proximal
Tssr16666	transcription start site region 16666	1546 bp downstream
Tssr16667	transcription start site region 16667	1242 bp downstream
Tssr16668	transcription start site region 16668	1186 bp downstream
Tssr22950	transcription start site region 22950	1958 bp upstream
Tssr22951	transcription start site region 22951	1803 bp downstream
Tubb4b	tubulin, beta 4B class IVB	1915 bp upstream