rs28257681 SNP Detail

Summary

• ID
  rs28257681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25112482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTACTGCTG GTACTCGGAC ACCAGGTCGT TCATGTTGCT
  CTCAGCCTCA GTGAACTCCA TCTCATCCAT GCCTTCACCC GTGTACCAGT GTAGGAAGGC
  Y
  TTGCGTCGGA ACATGGCTGT GAACTGCTCT GAGATGCGTT TGAACAGCTC CTGAATAGCG
  GTGCTGTTGC CAATGAAGGT GGCCGACATT TTCAGGCCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37423297	NES08765596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs28257681					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423297	NES08765596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25112482 () rs orientation: forward

Symbol	Name	Function Class
Cimip2a	ciliary microtubule inner protein 2A	190 bp downstream
Cpgi11300	CpG island 11300	1298 bp proximal
Tssr22949	transcription start site region 22949	1760 bp downstream
Tubb4b	tubulin, beta 4B class IVB	within coordinates