rs28259517 SNP Detail

Summary

• ID
  rs28259517
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117706621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACTAGCCC CACCAGTGTC ACAATGCTGG ACAGCTCTGT
  CCTCACCTTT GGCTGAACAC GGGACCGCTA GCCACCAGGC AGGGTCTGGG CTCCAGTCTG
  M
  ATTGAGGCAT CTTGGCAATC AAGAAGGGAA CTGAAAACGG CTTCAGCGAG TGGCAGCCTG
  TTCAAGGTAC ATTGTCCATT AGGAATGGCA GGCCCGCGCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37243941	NES08505520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28259517					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37243941	NES08505520	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117706621 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460821	regulatory region 460821	1448 bp distal
Rr460822	regulatory region 460822	542 bp distal
Syngr2	synaptogyrin 2	1512 bp downstream
Tk1	thymidine kinase 1	within coordinates
Tssr106086	transcription start site region 106086	1960 bp downstream