rs28260998 SNP Detail

Summary

• ID
  rs28260998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140689432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTAATAATTC TGTAGTAGCT
  Y
  TGTCATAGGT CTCCCCACAC GCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37787620	NES09135697	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	T	T	C	T	C	T	T
ss147720389	ENSMUSSNP6002240	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28260998					SNP	T	T	C	C	C	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37787620	NES09135697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140689432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15201	CpG island 15201			37 bp distal
Gm34431	predicted gene, 34431			679 bp upstream
Gm68270	predicted gene, 68270			871 bp upstream
Rr367768	regulatory region 367768			within coordinates
Rr603592	regulatory region 603592			908 bp distal
Rr603593	regulatory region 603593			926 bp distal
Rr603594	regulatory region 603594			391 bp distal
Rr603595	regulatory region 603595			813 bp distal
Rr603596	regulatory region 603596			610 bp proximal
Rr603597	regulatory region 603597			1283 bp proximal
Rr603598	regulatory region 603598			1607 bp proximal
Rr603599	regulatory region 603599			1890 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)			Intron
				Noncoding-Transcript-Variant
Tssr40003	transcription start site region 40003			828 bp downstream
Tssr40004	transcription start site region 40004			809 bp downstream
Tssr40005	transcription start site region 40005			719 bp downstream
Tssr40006	transcription start site region 40006			706 bp downstream
Tssr40007	transcription start site region 40007			1073 bp upstream