rs28261007 SNP Detail

Summary

• ID
  rs28261007
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140688317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC CAATCAGGTA GGGACTGACA
  K
  GTTCTCTAGA TTTAGCACAA AGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37787629	NES09135687	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		T	T	T	G	T	G	T	T
ss45627877	mCV23009628	ABI	CRAMUS_MOUSE	f	SNP		T	G					G	T
ss147720353	ENSMUSSNP1340334	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261007					SNP	T	T	G	G	G	T	G	G	T	T	T	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37787629	NES09135687	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140688317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	103 bp proximal
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	within coordinates
Rr367768	regulatory region 367768	within coordinates
Rr603592	regulatory region 603592	within coordinates
Rr603593	regulatory region 603593	168 bp proximal
Rr603594	regulatory region 603594	224 bp proximal
Rr603595	regulatory region 603595	281 bp proximal
Rr603596	regulatory region 603596	1725 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	265 bp upstream
Tssr40003	transcription start site region 40003	276 bp upstream
Tssr40004	transcription start site region 40004	295 bp upstream
Tssr40005	transcription start site region 40005	366 bp upstream
Tssr40006	transcription start site region 40006	398 bp upstream