rs28261011 SNP Detail

Summary

• ID
  rs28261011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140687361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTCATA GAATCTTAAC
  TCAGCTGCCA CAACCCCTAG TGATTCAGGC AAGGACGCTA TAAGTCAAAA AGTGGCGAAG
  GACTTGTCAA TGGTCACATG GCCTTGAGGG GGCGATCAAG GTAACCCCCA GGGGTTCAGG
  CCTCTCCACA CCCCCTTTAA TGAGGCTACC TGGCAGAGAA GCCAGATTCA GGGTGAGTTC
  Y
  CAGAAACTTG GCCCCATCTA GCCATTCCTC CTGTCATGGT AATTTCTCCA GTGTCTTCTA
  AAAGAGCCAG CGTGAGGAAA CCCAAGACTA TAAACAGTGC CCTCCTCTGC CAAAGGTGAG
  CGGAAAGAAA TCAAATCCTT CCTCTGGTAA CAAGGACCAG CAAAGTCACT GGGTGCCCCA
  AGAGACCAAG TGACTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37787633	NES09135823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261011					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37787633	NES09135823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140687361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	1059 bp proximal
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	286 bp downstream
Rr367768	regulatory region 367768	within coordinates
Rr603590	regulatory region 603590	1669 bp distal
Rr603591	regulatory region 603591	1994 bp distal
Rr603592	regulatory region 603592	663 bp proximal
Rr603593	regulatory region 603593	1124 bp proximal
Rr603594	regulatory region 603594	1180 bp proximal
Rr603595	regulatory region 603595	1237 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	1221 bp upstream
Tssr40003	transcription start site region 40003	1232 bp upstream
Tssr40004	transcription start site region 40004	1251 bp upstream
Tssr40005	transcription start site region 40005	1322 bp upstream
Tssr40006	transcription start site region 40006	1354 bp upstream