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rs28261012 SNP Detail
Summary
  • ID
    rs28261012
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:140687026 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGAGG AGTTACAAAG AAAATGACAG
    Y
    CTTCCTACAA CCTTGGCCGA TTTGG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss37787634 NES09135820 PERLEGEN MM_PANEL2 f SNP T C C C T C T T T T T T C T
ss45659939 mCV23009618 ABI CRAMUS_MOUSE f SNP T T C C T
ss147720323 ENSMUSSNP7031254 ENSEMBL ENSEMBL_Sanger f SNP T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs28261012 SNP T T C C C T C C T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37787634 NES09135820 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:140687026 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15201 CpG island 15201 1394 bp proximal
Gm13031 predicted gene 13031 1813 bp upstream
Gm34431 predicted gene, 34431 within coordinates
Gm68270 predicted gene, 68270 621 bp downstream
Rr367768 regulatory region 367768 135 bp upstream
Rr603589 regulatory region 603589 1805 bp distal
Rr603590 regulatory region 603590 1334 bp distal
Rr603591 regulatory region 603591 1659 bp distal
Rr603592 regulatory region 603592 998 bp proximal
Rr603593 regulatory region 603593 1459 bp proximal
Rr603594 regulatory region 603594 1515 bp proximal
Rr603595 regulatory region 603595 1572 bp proximal
Sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 1556 bp upstream
Tssr40003 transcription start site region 40003 1567 bp upstream
Tssr40004 transcription start site region 40004 1586 bp upstream
Tssr40005 transcription start site region 40005 1657 bp upstream
Tssr40006 transcription start site region 40006 1689 bp upstream
Tssr44287 transcription start site region 44287 1857 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory