rs28261015 SNP Detail

Summary

• ID
  rs28261015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140686622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCAGCA CGACTGGAAT
  GGGGACAGTT ATTCAAACTC ATCAGGGTTG TTGGGAGGAC CAGAGGAGAC TGTTGATGTA
  AACACATTTG TGGGCGATGA GGTGAGATTC TGCATAAACA CAGGGCTTCC AGCAGCATGT
  CTGATGAAAG CAATATATCA CTCTCTCCGC GGATGCCAGC CAACCAGCCC CAAACCCTGC
  R
  GTCTTACGGC AAGGACAGCT TGGCAACCCA AGTCAGGAAG GGGCCATGAA GACCTTTAAG
  CCCTATGGCA TCTGTGCCTT TCTGGCACCC CAAAGCTCAG GGCGGAGGTG GAGCCACCCA
  GGAATTTATT ATCCTTCCAT AACATTAAGC TCCCCAAATC CCCATGACGC CCAGGAATGA
  TGTGACTGCA GGGTGTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37787637	NES09135815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261015					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37787637	NES09135815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140686622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	1798 bp proximal
Gm13031	predicted gene 13031	1409 bp upstream
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	1025 bp downstream
Rr367768	regulatory region 367768	539 bp upstream
Rr603589	regulatory region 603589	1401 bp distal
Rr603590	regulatory region 603590	930 bp distal
Rr603591	regulatory region 603591	1255 bp distal
Rr603592	regulatory region 603592	1402 bp proximal
Rr603593	regulatory region 603593	1863 bp proximal
Rr603594	regulatory region 603594	1919 bp proximal
Rr603595	regulatory region 603595	1976 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	1960 bp upstream
Tssr40003	transcription start site region 40003	1971 bp upstream
Tssr40004	transcription start site region 40004	1990 bp upstream
Tssr44287	transcription start site region 44287	1453 bp upstream