rs28261214 SNP Detail

Summary

• ID
  rs28261214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTATCT ATCTTCTAGA
  AGACAGGTCC TTCAGCTTTC ATCTACTCCA GAGGTCTGTG GCAAAAATAG ACTAGGATCA
  CCAACGACCG ACTTTCATTG AACACATGCC GTTAGGAAAG GGAAGGGATG GATCCAAGGG
  TTGGGGTAGG GGGGGTGAGG GGGGAGGCAA GCCGAGGAAA GAGTATAGAT GTAGAGAACC
  R
  TAAGGGAGGA ACAAGTTCTA AGTTCTAAGG ATGACACTTT GGGCCAACAG CTCTGAAGCA
  AAGCATTCAG ATGTAGAAGA GGACTGGGGT CCAGAACCCC TTGTTCTGAA ACAGACAGCA
  TCCTAAGGAC CACAGCCCCT CAGTCCCAGA AGTGGTACAA ACGTTGAGAG TCCCTTCTAG
  TTCTAGTAGT TTGTCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37829533	NES08708487	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G	G	A	G	G	G		A	A	A	A		A
ss148343886	ENSMUSSNP938696	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320627893	CHEV_2_174297006	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28261214					SNP	A	A	A	G	G	G	G	A	G	G	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829533	NES08708487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	813 bp proximal
Gm38546	predicted gene, 38546	1584 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	1372 bp upstream
Rr572131	regulatory region 572131	578 bp distal
Rr572132	regulatory region 572132	189 bp distal
Rr572133	regulatory region 572133	458 bp proximal
Rr572134	regulatory region 572134	1097 bp proximal
Rr572135	regulatory region 572135	1383 bp proximal
Rr572136	regulatory region 572136	1492 bp proximal
Rr572137	regulatory region 572137	1566 bp proximal
Rr572138	regulatory region 572138	1691 bp proximal
Tssr28035	transcription start site region 28035	1373 bp downstream
Tssr28036	transcription start site region 28036	1444 bp downstream