rs28261215 SNP Detail

Summary

• ID
  rs28261215
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGACAT ACAGATCCTG
  GTGCCAAAGT GCATGTAGGC TGGGACTTTG GGTGGCCCAA CCGGTCTGGA TACAAGGCAC
  TGCTGGGCTC CTCCCAGGGA GCAGTTGTGT ATCTATCTTC TAGAAGACAG GTCCTTCAGC
  TTTCATCTAC TCCAGAGGTC TGTGGCAAAA ATAGACTAGG ATCACCAACG ACCGACTTTC
  W
  TTGAACACAT GCCGTTAGGA AAGGGAAGGG ATGGATCCAA GGGTTGGGGT AGGGGGGGTG
  AGGGGGGAGG CAAGCCGAGG AAAGAGTATA GATGTAGAGA ACCGTAAGGG AGGAACAAGT
  TCTAAGTTCT AAGGATGACA CTTTGGGCCA ACAGCTCTGA AGCAAAGCAT TCAGATGTAG
  AAGAGGACTG GGGTCCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829534	NES08708484	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261215					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829534	NES08708484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	917 bp proximal
Gm38546	predicted gene, 38546	1688 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	1476 bp upstream
Rr572131	regulatory region 572131	474 bp distal
Rr572132	regulatory region 572132	85 bp distal
Rr572133	regulatory region 572133	562 bp proximal
Rr572134	regulatory region 572134	1201 bp proximal
Rr572135	regulatory region 572135	1487 bp proximal
Rr572136	regulatory region 572136	1596 bp proximal
Rr572137	regulatory region 572137	1670 bp proximal
Rr572138	regulatory region 572138	1795 bp proximal
Tssr28035	transcription start site region 28035	1477 bp downstream
Tssr28036	transcription start site region 28036	1548 bp downstream