rs28261217 SNP Detail

Summary

• ID
  rs28261217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATGGGA ATTCTCCTGT
  CTCAGGCTCC CAAACTGTTA GGGTTACAGG CATGCAGCAC CATCCTGGCT GACATACAGA
  TCCTGGTGCC AAAGTGCATG TAGGCTGGGA CTTTGGGTGG CCCAACCGGT CTGGATACAA
  GGCACTGCTG GGCTCCTCCC AGGGAGCAGT TGTGTATCTA TCTTCTAGAA GACAGGTCCT
  K
  CAGCTTTCAT CTACTCCAGA GGTCTGTGGC AAAAATAGAC TAGGATCACC AACGACCGAC
  TTTCATTGAA CACATGCCGT TAGGAAAGGG AAGGGATGGA TCCAAGGGTT GGGGTAGGGG
  GGGTGAGGGG GGAGGCAAGC CGAGGAAAGA GTATAGATGT AGAGAACCGT AAGGGAGGAA
  CAAGTTCTAA GTTCTAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829536	NES08708476	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261217					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829536	NES08708476	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	982 bp proximal
Gm38546	predicted gene, 38546	1753 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	1541 bp upstream
Rr572131	regulatory region 572131	409 bp distal
Rr572132	regulatory region 572132	20 bp distal
Rr572133	regulatory region 572133	627 bp proximal
Rr572134	regulatory region 572134	1266 bp proximal
Rr572135	regulatory region 572135	1552 bp proximal
Rr572136	regulatory region 572136	1661 bp proximal
Rr572137	regulatory region 572137	1735 bp proximal
Rr572138	regulatory region 572138	1860 bp proximal
Tssr28035	transcription start site region 28035	1542 bp downstream
Tssr28036	transcription start site region 28036	1613 bp downstream