rs28261223 SNP Detail

Summary

• ID
  rs28261223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174312371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAACTGC GGGGACACGA
  GCTATCATGT ATCTGCCCTT GGTGAAGCTT GAGCTAGGTC AACAGTGATG TTTCCCTATT
  GGCCTGAAGA GAAGAGATAT GGAAAAACCA CAATAAGGCA CGGTGGCCCC AGGATGTTTA
  TTAATTTTCA GAATGGGGGA GGAGATAAGT GCATGGTCGG TAGCTAACCA TGCTTCCTGA
  Y
  TGGATGAGGG ACCAAGAAGG GCCTCCTCTG ATTTTCATTT TAGATAGTTG CCATAGTGAC
  AAGAAGAGGC CTTGGCCTAT ATCACTGCCA TTTGGGGACT GTTTAGATTT ATGAAGCTTC
  TACTTACAGA CCTTTGTTGA CTGTGGAATA GGGCTTGAGA TTAAAAACAA ATTAAGGCTC
  ACTTATACAA TATGTAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829542	NES08708552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261223					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829542	NES08708552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174312371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	1740 bp proximal
Prelid3b	PRELI domain containing 3B	Intron
Rr572131	regulatory region 572131	within coordinates
Rr572132	regulatory region 572132	471 bp proximal
Rr572133	regulatory region 572133	1385 bp proximal