rs28261233 SNP Detail

Summary

• ID
  rs28261233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174311673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTTTGA CACATCTGAT
  ATCTCTGAAG CAAAGCACTT TACAGAGGCT AGCCATCATG ATAGTCCTTT CTCAATCTTT
  ACCACTATCC ACTTCCACAG GAGGGAAGAA AAAACAGCCC ATGAACATGC ATTAAAGAAA
  TGATGTTCAT AGAAACAAGT GGGAAAATGC CAGCCTACCA TTCATTCCTG CATCTGACCA
  Y
  AATTGTATAG CTATAAGAAG TTCAGGACCC GTGATAAGAA CTAGGAAGGT CCCACCACCA
  ATTCACAATT AGCATCTTCC TTATCAATAT GGTAAATAAC ATGAGCTCCC TTGGTCATTC
  CCCGCTGTTT TTTCCATGTC TGGCTTCTGC TCTGCAAAGG CCGCGCAATA GGAAAGGTGG
  AGGCCCTGAT GACCTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829552	NES08708542	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261233					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829552	NES08708542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174311673 () rs orientation: forward

Symbol	Name	Function Class
Prelid3b	PRELI domain containing 3B	Intron
Rr572131	regulatory region 572131	313 bp proximal
Rr572132	regulatory region 572132	1169 bp proximal