rs28261246 SNP Detail

Summary

• ID
  rs28261246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174310022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGGA AGGGAGGGAG
  GAAAAGAAAG ACAGACAGAC AGAAAAAGGA AGAAAGCCTC TGTCCATGCT ACCCCAACCA
  ACCTTGAATG CTATCTGTAC TATGGTGTCT GCATCTGTGA TCCTCCTGCC TGAGCCTTTA
  AAGCAGCTGC AACTGTAGGC ACAGCCACTC TGCCCAGGCA GGTGCTGCCT ATGACAGCTC
  R
  TCTAGCCCCA CACATTTTAC TCTATGGAAA GAAAGGTTAG GAGTAAAAAC GAAGAAGGCA
  GGACTCACGT TGGTGGACTT GAGCTCCATT GTCCTCGTTA CCGGGTCAAC TACAGAATGC
  TCCTGCACGT ACGTTTTCGT TCTTGCTGCA CCAATAAGCT ACGAGCAACA CTACAGTTAG
  CAATCAGTTG CCAGCCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829565	NES08708528	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28261246					SNP	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829565	NES08708528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174310022 () rs orientation: forward

Symbol	Name	Function Class
Prelid3b	PRELI domain containing 3B	Intron
Rr572131	regulatory region 572131	1964 bp proximal