rs28262046 SNP Detail

Summary

• ID
  rs28262046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164796099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GGAGGGCAGA GGTTCTGACT
  R
  TGACCCCAAA CGATACGAAG GTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515768	NES08880338	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A			G	A		G
ss45248533	mCV23741108	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss148233760	ENSMUSSNP1342850	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320607226	CHEV_2_164779679	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262046					SNP	G	G	A	G	A	A	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515768	NES08880338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164796099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	518 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569777	regulatory region 569777	1535 bp distal
Rr569778	regulatory region 569778	728 bp distal
Rr569779	regulatory region 569779	1710 bp proximal
Tssr21693	transcription start site region 21693	1745 bp downstream