rs28262047 SNP Detail

Summary

• ID
  rs28262047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATTGCA ATTCCCCTTG
  AGTAGCTCTG ATACTTAGCT TCTCTGGCTC CTGCCTCCTG CCCTTCAAAG AGACTGTGCC
  ACACCTTAGT GTCTACTGAC CCTTCTCTTC CGCAGGACGT CAAATGTGGG TGTACACAGG
  CAAGACCGTG CTGGGCCCCA GGAGTCTGGA TAAGTTGGGT CTAGGCCCAG AGGTAACCCA
  Y
  GTCAGCGGGC TTCTCCCGCG TCGTCTCGGG AAGGCTCTGC TGTTCAGCAA GGGGCGTGTC
  TGGAGGTAAG AGCGACCGAG GCCACCAGTA GGGGGAGCCC TAGCGCCACT CTCCCGCAGC
  TCTGGGGTGG GGAGCGGGAG AGGCTCATCG CTTGTCCACC TTCCTGCAGA TTCGACTTGA
  AGTCTCAGAA GGTGGATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515774	NES08880385	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262047					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515774	NES08880385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	within coordinates
Mmp9	matrix metallopeptidase 9	Coding-Synonymous
Rr569776	regulatory region 569776	1389 bp distal
Rr569777	regulatory region 569777	705 bp distal
Rr569778	regulatory region 569778	81 bp proximal
Tssr21693	transcription start site region 21693	915 bp downstream