rs28262050 SNP Detail

Summary

• ID
  rs28262050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164794871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTAAGCA GGGAGGGTGT
  GTGGGTGAGA GAGGGGGTTT GGAGAGGATC CTGCTTGCGT CTTCCACCAA CTTTCTCGGG
  CCCTGATATT TCCTTTCTTC TCAGTTGGTA CTGGAAGTTC CTGAATCATA GAGGAAGCCC
  ATTACAGGGC CCCTTCCTTA CTGCCCGCAC GTGGCCAGCC CTGCCTGCAA CGCTGGACTC
  M
  GCCTTTGAGG ATCCGCAGAC CAAGAGGGTT TTCTTCTTCT CTGGTTAGTT TGTGCCCCTC
  TAGCTCATCG ATCCCTCAGT ATCCGTCAGC TTAGGACAGA CACCTAGTGT AACCCGTGAA
  ACTGCGACTC CAAAAGAGCG CCCCTGCCCA GCTGATAAGA TTTGACATTG GGGGGACGGA
  CGGACGGACG GACGGTACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515777	NES08880382	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262050					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515777	NES08880382	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164794871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12680	CpG island 12680	1710 bp distal
Cpgi12681	CpG island 12681	163 bp proximal
Mmp9	matrix metallopeptidase 9	Coding-Synonymous
Rr569776	regulatory region 569776	991 bp distal
Rr569777	regulatory region 569777	307 bp distal
Rr569778	regulatory region 569778	479 bp proximal
Tssr21691	transcription start site region 21691	1790 bp downstream
Tssr21692	transcription start site region 21692	1730 bp downstream
Tssr21693	transcription start site region 21693	517 bp downstream