rs28262054 SNP Detail

Summary

• ID
  rs28262054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164794150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGAGC AGCCAGTGGT
  CTTAATTAAC TATTGAGCCA TGTCTTCAGC CCCCAAAGGA GCTTTTAAAG GCATAGCAGG
  CCAGGAATGT TTGCCCTTAG GAGTCAGAGG CAGCTCACAG CACTGTTTGA CACAGTGGTC
  ACCCAAAAGA CTCTCTCCCT GCCTGACTCG GGGAAGGGAG GGACATTCTG CCTGTTCGGT
  Y
  CTGAGAACCC AGTCCATATC TTCACAGAGC TCAGTTCTGG ACACTTAGGC TTGGCATATG
  AGAAGAGGCT TGCTGCGTGT AGCCTCTAGC TTCAAGGGAA GACTGAAGGC ACCATTGCTG
  GGCTTGGTGG TAGGCTGGGG CTACAGAGAA ATGCTGACTA GTGTGTCTTA TCTAGTGTCT
  TGTTTTTAGG TCGTGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515781	NES08880375	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262054					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515781	NES08880375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164794150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1731 bp distal
Cpgi12680	CpG island 12680	989 bp distal
Cpgi12681	CpG island 12681	884 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	270 bp distal
Rr569777	regulatory region 569777	393 bp proximal
Rr569778	regulatory region 569778	1200 bp proximal
Tssr21691	transcription start site region 21691	1069 bp downstream
Tssr21692	transcription start site region 21692	1009 bp downstream
Tssr21693	transcription start site region 21693	193 bp upstream