AGGAG CTTTTAAAGG CATAGCAGGC Y AGGAATGTTT GCCCTTAGGA GTCAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37515783 | NES08880370 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | C | T | T | T | T | T | C | C | T | T | C | C | ||||
ss148233695 | ENSMUSSNP5672588 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | T | |||||||||||||||
ss320607216 | CHEV_2_164777611 | CHEVERUD | SCREENING_POP | f | SNP | C | T | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs28262056 | SNP | C | C | T | C | T | T | T | T | T | T | C | C | C | T | T | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37515783 | NES08880370 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:164794031 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12679 | CpG island 12679 | 1612 bp distal | ||||||
Cpgi12680 | CpG island 12680 | 870 bp distal | ||||||
Cpgi12681 | CpG island 12681 | 1003 bp proximal | ||||||
Mmp9 | matrix metallopeptidase 9 | Intron | ||||||
Rr569776 | regulatory region 569776 | 151 bp distal | ||||||
Rr569777 | regulatory region 569777 | 512 bp proximal | ||||||
Rr569778 | regulatory region 569778 | 1319 bp proximal | ||||||
Tssr21691 | transcription start site region 21691 | 950 bp downstream | ||||||
Tssr21692 | transcription start site region 21692 | 890 bp downstream | ||||||
Tssr21693 | transcription start site region 21693 | 312 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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