rs28262058 SNP Detail

Summary

• ID
  rs28262058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164793549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG GCTTTGATAG GGTTAACTGA
  W
  GTAGAATGAT GCCTGACTTT ATTAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515785	NES08880407	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	T	A	T	T		A	T	T	T		A
ss148233665	ENSMUSSNP3376650	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					T
ss320607210	CHEV_2_164777129	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262058					SNP	A	A	T	A	T	T	A	T	T	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515785	NES08880407	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164793549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1130 bp distal
Cpgi12680	CpG island 12680	388 bp distal
Cpgi12681	CpG island 12681	1485 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	310 bp proximal
Rr569777	regulatory region 569777	994 bp proximal
Rr569778	regulatory region 569778	1801 bp proximal
Tssr21691	transcription start site region 21691	468 bp downstream
Tssr21692	transcription start site region 21692	408 bp downstream
Tssr21693	transcription start site region 21693	794 bp upstream