rs28262065 SNP Detail

Summary

• ID
  rs28262065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164792443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGAAGGC AAACCCTGTG
  TGTTCCCGTT CATCTTTGAG GGCCGCTCCT ACTCTGCCTG CACCACTAAA GGCCGCTCGG
  ATGGTTACCG CTGGTGCGCC ACCACAGCCA ACTATGACCA GGATAAACTG TATGGCTTCT
  GCCCTACCCG AGGTACCTCT GCCCCGCCTA TCAGGGTCAG CCCGGCTCTG CTTTCCAGCA
  Y
  TGGTCTCTAA AGGTGGCTTT TCCATCCATT CATTTCCTTC CTCTATTTAC CATCCGCCGT
  CTGCCTCCAC ACCTCCTCTC CTTGACTCCC AATTGGGCAG CCTTTTTTGT TTACCCTTAG
  GCTTTGGTCT CCAATCTTAG CCTCTGCCTA TCAATATTTT CCGGCTTCCG CGGTGCTCCA
  CAGCGCCCCC TAGGCTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515792	NES08880475	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262065					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515792	NES08880475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164792443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	24 bp distal
Cpgi12680	CpG island 12680	262 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Rr569776	regulatory region 569776	1416 bp proximal
Tssr21691	transcription start site region 21691	627 bp upstream
Tssr21692	transcription start site region 21692	687 bp upstream
Tssr21693	transcription start site region 21693	1900 bp upstream