rs28262066 SNP Detail

Summary

• ID
  rs28262066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164792231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGG GTCTCCTCAG GACTCTACAC
  R
  GAGCACGGCA ACGGAGAAGG CAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515793	NES08880474	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A	G	A	A	G		G	A	A	G		G
ss45292015	mCV23740805	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss148233591	ENSMUSSNP5363701	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320607195	CHEV_2_164775811	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262066					SNP	G	G	A	G	A	A	A	G	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515793	NES08880474	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164792231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	474 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Rr569776	regulatory region 569776	1628 bp proximal
Tssr21691	transcription start site region 21691	839 bp upstream
Tssr21692	transcription start site region 21692	899 bp upstream