rs28262068 SNP Detail

Summary

• ID
  rs28262068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164792145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG GTGTGGCTAC TCGCCCTCTC
  Y
  CTGGGTCTGG TCCCCTCTGT GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515795	NES08880472	PERLEGEN	MM_PANEL2	f	SNP			C		T		C	T		C
ss45266652	mCV23740795	ABI	CRAMUS_MOUSE	f	SNP	C	T		T
ss148233576	ENSMUSSNP436831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320607192	CHEV_2_164775725	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262068					SNP	C	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515795	NES08880472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164792145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	560 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Rr569776	regulatory region 569776	1714 bp proximal
Tssr21690	transcription start site region 21690	1980 bp downstream
Tssr21691	transcription start site region 21691	925 bp upstream
Tssr21692	transcription start site region 21692	985 bp upstream