rs28262070 SNP Detail

Summary

• ID
  rs28262070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164791827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA ACTCCCTTCT CTTACACTGG
  Y
  GTGTGGCCAG ACGCCCTGAC TCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515797	NES08880470	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	C		C			T	C	T		T
ss45373756	mCV23740782	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss148233560	ENSMUSSNP6721237	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320607189	CHEV_2_164775407	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262070					SNP	T	T	C	T	C	C	T	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515797	NES08880470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164791827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	878 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	1736 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	1709 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21690	transcription start site region 21690	1662 bp downstream
Tssr21691	transcription start site region 21691	1243 bp upstream
Tssr21692	transcription start site region 21692	1303 bp upstream