rs28262071 SNP Detail

Summary

• ID
  rs28262071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164791620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCGCTC TTATGCCTGC
  CCCACAATCC CTAGTCGCTG CTTCCACAAA TGACCTCCCC CAACCCCCAG CGGCTTTGGA
  GTCGCAGTCA CCTCTTCTCA AAGTCTGGTG CGCTGCTCAG CGGGAGACAC AGTCGCTTTC
  AGTCTCTTGC CCTTAAAGAG AGCAAAGTGT TGCTGATTGA GTCCCTTCCT CTCCGATGGC
  Y
  TCTTGCAGAG CACGGAGACG GGTATCCCTT CGACGGCAAG GACGGCCTTC TGGCACACGC
  CTTTCCCCCT GGCGCCGGCG TTCAGGGAGA TGCCCATTTC GACGACGACG AGTTGTGGTC
  GCTGGGCAAA GGCGTCGGTG AGATCCTGAG CCTTCCAGTA TCCGCCCCAT CCCCACCCCT
  GTCCCAACTC CCTTCTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515798	NES08880469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262071					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515798	NES08880469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164791620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	1085 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	1529 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	1502 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21689	transcription start site region 21689	1952 bp downstream
Tssr21690	transcription start site region 21690	1455 bp downstream
Tssr21691	transcription start site region 21691	1450 bp upstream
Tssr21692	transcription start site region 21692	1510 bp upstream