rs28262072 SNP Detail

Summary

• ID
  rs28262072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164791556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCCCGG GCTGGGCAGG
  CTATGGGAGG GACGACCACG GACAGAGTAG AAGGGACAGC AGATCTGTCC GCTCTTATGC
  CTGCCCCACA ATCCCTAGTC GCTGCTTCCA CAAATGACCT CCCCCAACCC CCAGCGGCTT
  TGGAGTCGCA GTCACCTCTT CTCAAAGTCT GGTGCGCTGC TCAGCGGGAG ACACAGTCGC
  Y
  TTCAGTCTCT TGCCCTTAAA GAGAGCAAAG TGTTGCTGAT TGAGTCCCTT CCTCTCCGAT
  GGCCTCTTGC AGAGCACGGA GACGGGTATC CCTTCGACGG CAAGGACGGC CTTCTGGCAC
  ACGCCTTTCC CCCTGGCGCC GGCGTTCAGG GAGATGCCCA TTTCGACGAC GACGAGTTGT
  GGTCGCTGGG CAAAGGCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515799	NES08880468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262072					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515799	NES08880468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164791556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	1149 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	1465 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	1438 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21689	transcription start site region 21689	1888 bp downstream
Tssr21690	transcription start site region 21690	1391 bp downstream
Tssr21691	transcription start site region 21691	1514 bp upstream
Tssr21692	transcription start site region 21692	1574 bp upstream