rs28262078 SNP Detail

Summary

• ID
  rs28262078
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164790120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACGC TGAGTCAGCA TAAGCCTGGA GGGGAGGGGC GGGGTCACTG ATTCCGTTTT
  M
  CTGCCTCTTT AAAATCTCTG CAAAGGCAGC GTTAGCCAGA AGCTGCGGTC CTCACCATGA
  GTCCCTGGCA GCCCCTGCTC CTGGCTCTCC TGGCTTTCGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37515807	NES08880460	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28262078					SNP	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515807	NES08880460	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164790120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	888 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	29 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	2 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	1125 bp downstream
Tssr21689	transcription start site region 21689	452 bp downstream
Tssr21690	transcription start site region 21690	31 bp upstream