rs28262081 SNP Detail

Summary

• ID
  rs28262081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT GAGGTCTCGT GAACACTGCT
  R
  AAAGTGGTTT TTCTGTGTTT CGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss37515810	NES08880457	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		G		A		G		G		G
ss45288676	mCV23740747	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss148233520	ENSMUSSNP2816744	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A				G
ss320607183	CHEV_2_164772962	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs28262081					SNP	G	G	A	G	A	A	A	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515810	NES08880457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1626 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	598 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	600 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	387 bp downstream
Tssr21689	transcription start site region 21689	279 bp upstream
Tssr21690	transcription start site region 21690	769 bp upstream