rs28262082 SNP Detail

Summary

• ID
  rs28262082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCCGGC TGTTGGCAAG
  ACTGTGCCAA AGCTTTCCTG AGTGGAGCAG GGCAGGGCTG GAGGAGGGGA AGGGTCCATG
  ACGATCTCAC AGCTCGGGAG AGGAAGGTGT TTGCCCCATC CAGGTCACCC CAAGGCTTAG
  AGCCAAGACC CCAGTCTCCT AATTTCCAAT CACAAACCTG ACACCATCAA CTGAGGTCTC
  R
  TGAACACTGC TGAAAGTGGT TTTTCTGTGT TTCGAGAGTC TCATTTTATC CTCAGATCAA
  TATAGGGACA AAGGCTTGAG CGACAAAGGG TCTGTTTTTG TTCTTTAAAC AGAAGAGGAA
  GGATAGTGCT AGCCTGAGAA GGATGAAGCT TCTGCTTGCT CCCACATGTG TGTGTCCCCC
  CGCCCCCCAG GCTCATCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515811	NES08880456	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	A	G		G	G	A	G
ss148233515	ENSMUSSNP3734410	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262082					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515811	NES08880456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1638 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	610 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	612 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	375 bp downstream
Tssr21689	transcription start site region 21689	291 bp upstream
Tssr21690	transcription start site region 21690	781 bp upstream