rs28262250 SNP Detail

Summary

• ID
  rs28262250
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164712900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCGCTT TTCTTTACCT
  GAAACTTGCT CTACACCAGG CTGGCCTTGA ACTCAGAGAT CTGCTTGCCT CTGTCTCCAA
  GGATAAAAGG CATGCCTGTA TTGCAGCCGG AGTAGCCATG TTCTGAATTA AAATTCCTCT
  ACAAGCTTCC TGTTCTCTCC ATCCATTCTT CTGTTGACAG ATGCCAAGAC TGTCCTGTCC
  W
  AGCTTGCTTT TCTGTTGTGA CAGACAGCAT GGACAAAAGC TATCCATTAT TGAGGGAAGC
  CCCGCAGGAG CTGAAGACAG GAACGGCAGG AGGAGCCCTG CTTTTCTTCT GCCTTGCTCT
  CCTGCCTGCT CAGCCTGCTT CTGCACCCCA GCTCCTGGAG CTGAGGACTA ACCATAAGGT
  CTCATGCTTG CTGGACAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515982	NES08882336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262250					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515982	NES08882336	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164712900 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1396 bp distal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	1404 bp distal
Gm75526	predicted gene, 75526	within coordinates
Rr40389	regulatory region 40389	701 bp proximal
Rr47627	regulatory region 47627	900 bp distal