rs28262254 SNP Detail

Summary

• ID
  rs28262254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164710097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CTGTGTGCTC ACACAAAGGC
  K
  TGCGTGGGAA CATTCACAGC TGCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37515986	NES08882380	PERLEGEN	MM_PANEL2	f	SNP	T					G		T	G
ss45224789	mCV23740419	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss148232443	ENSMUSSNP2565426	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
ss320606978	CHEV_2_164693677	CHEVERUD	SCREENING_POP	f	SNP							T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs28262254					SNP	T	T	G	T	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515986	NES08882380	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164710097 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1297 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	1308 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	1097 bp distal
Rr40388	regulatory region 40388	97 bp distal
Rr47627	regulatory region 47627	1304 bp proximal
Rr374207	regulatory region 374207	within coordinates