rs28262255 SNP Detail

Summary

• ID
  rs28262255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164710002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG TTTTGTTTTT TTTTAATTCG
  R
  TGTGGGTGGC TGGCACTTGT AACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515987	NES08882379	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G		A	G	G	G		G
ss45205168	mCV23740407	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss148232429	ENSMUSSNP1423037	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320606975	CHEV_2_164693582	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28262255					SNP	A	A	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515987	NES08882379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164710002 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1392 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	1403 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	1002 bp distal
Rr40388	regulatory region 40388	2 bp distal
Rr47627	regulatory region 47627	1399 bp proximal
Rr374207	regulatory region 374207	within coordinates