rs28262256 SNP Detail

Summary

• ID
  rs28262256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164709498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATGTGG AGTTGGTCTG
  CAGCCAGGAA TGTCATACTT CCCTAATCTC TTCTGAGGCT CTGCAGAGCC CTATGGTCAT
  GGGAGGTGCC CCCTGGGGAT CTCAGTTGGC TGTGCGGACA TCTCTACTTC TAGATCCAAC
  CCACTCCAGG CTGCCCTGGA GCGGCAGTGC GTGCCTTTGG GTCCTGGTGT GGGAGAGGCT
  R
  CTGGCCTTGT TAAACTCTCT CACTGTCTCC CAAGGCAGAA CTTCAGGCCT GAGGTTAGAC
  CAACCTTGAT CCCAAACAAT TTGTAATAGA GCAGCTTTTC TTTCTTTAAA AAGATTTCTT
  ATTTGTGTGA ATAGCCTCAT GTGAGTGCAA TGCCTGCGGA GGCCAGAAGA GGGCAGCAGA
  CACCCCTAGA CATGGAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37515988	NES08882392	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28262256					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515988	NES08882392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164709498 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1896 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	1907 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	498 bp distal
Rr40388	regulatory region 40388	within coordinates
Rr47627	regulatory region 47627	1903 bp proximal
Rr374207	regulatory region 374207	within coordinates