rs28262257 SNP Detail

Summary

• ID
  rs28262257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164709405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGCCTT GTGGGCCCTG
  GCCTAATTCC CCGCTGAGCC TCTAAGCTCT TTTTTGCTTC CTGCTGGCAC GTCTGTCTCT
  CGCATTTCTC CAGGGTTATG TGGAGTTGGT CTGCAGCCAG GAATGTCATA CTTCCCTAAT
  CTCTTCTGAG GCTCTGCAGA GCCCTATGGT CATGGGAGGT GCCCCCTGGG GATCTCAGTT
  K
  GCTGTGCGGA CATCTCTACT TCTAGATCCA ACCCACTCCA GGCTGCCCTG GAGCGGCAGT
  GCGTGCCTTT GGGTCCTGGT GTGGGAGAGG CTACTGGCCT TGTTAAACTC TCTCACTGTC
  TCCCAAGGCA GAACTTCAGG CCTGAGGTTA GACCAACCTT GATCCCAAAC AATTTGTAAT
  AGAGCAGCTT TTCTTTCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515989	NES08882391	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	T	G		G	G	T	G
ss148232416	ENSMUSSNP4852401	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28262257					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515989	NES08882391	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164709405 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	1989 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	2000 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	405 bp distal
Rr40388	regulatory region 40388	within coordinates
Rr47627	regulatory region 47627	1996 bp proximal
Rr374207	regulatory region 374207	within coordinates