rs28264467 SNP Detail

Summary

• ID
  rs28264467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAACAGGG TACATCCCCA ACCCAGGCCC ACAACCAGCG
  CTGCATGGCA GGCCCTTGAC GGAGTCCTGA TGCACCACTG ACCCAGAGTA CACAGAAAGA
  Y
  GGACATAGAG AATGAGACAC GCTTTTCTCT CAACAGAAAG GTTCTCTCAG TCGGCGGAAG
  ACCCTTCTAG TAGTCACATG GGTATAAAGA TTCGGGCGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517798	NES08868738	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264467					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517798	NES08868738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175183 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	66 bp upstream
Tssr745	transcription start site region 745	109 bp upstream
Tssr746	transcription start site region 746	120 bp upstream
Tssr747	transcription start site region 747	133 bp downstream
Tssr748	transcription start site region 748	154 bp upstream
Tssr749	transcription start site region 749	186 bp upstream
Tssr750	transcription start site region 750	199 bp upstream
Tssr751	transcription start site region 751	253 bp upstream
Tssr752	transcription start site region 752	322 bp upstream
Tssr753	transcription start site region 753	329 bp upstream
Tssr754	transcription start site region 754	1001 bp upstream
Tssr21562	transcription start site region 21562	527 bp downstream
Tssr21563	transcription start site region 21563	518 bp downstream
Tssr21564	transcription start site region 21564	487 bp downstream
Tssr21565	transcription start site region 21565	474 bp downstream
Tssr21566	transcription start site region 21566	463 bp downstream
Tssr21567	transcription start site region 21567	451 bp downstream
Tssr21568	transcription start site region 21568	442 bp downstream
Tssr21569	transcription start site region 21569	32 bp upstream
Tssr21570	transcription start site region 21570	94 bp upstream
Tssr21571	transcription start site region 21571	125 bp upstream
Tssr21572	transcription start site region 21572	142 bp upstream
Tssr21573	transcription start site region 21573	171 bp upstream
Tssr21574	transcription start site region 21574	235 bp upstream
Tssr21575	transcription start site region 21575	1013 bp upstream
Tssr21576	transcription start site region 21576	1029 bp upstream
Tssr21577	transcription start site region 21577	1048 bp upstream
Tssr27433	transcription start site region 27433	90 bp downstream
Tssr27434	transcription start site region 27434	113 bp downstream
Tssr27435	transcription start site region 27435	141 bp downstream
Tssr27436	transcription start site region 27436	160 bp downstream
Tssr27437	transcription start site region 27437	181 bp downstream
Tssr27438	transcription start site region 27438	211 bp downstream
Tssr27439	transcription start site region 27439	225 bp downstream
Tssr27440	transcription start site region 27440	235 bp downstream
Tssr27441	transcription start site region 27441	290 bp downstream
Tssr27442	transcription start site region 27442	298 bp downstream
Tssr27443	transcription start site region 27443	361 bp downstream
Tssr27444	transcription start site region 27444	370 bp downstream
Tssr27445	transcription start site region 27445	986 bp downstream
Tssr27446	transcription start site region 27446	1030 bp downstream
Tssr27447	transcription start site region 27447	1125 bp downstream
Tssr27448	transcription start site region 27448	1739 bp downstream