rs28264468 SNP Detail

Summary

• ID
  rs28264468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTAGGCTA AAAAGTCAAT GGCTTTATAA ACAACAAAAC
  AGCAACAGGG TACATCCCCA ACCCAGGCCC ACAACCAGCG CTGCATGGCA GGCCCTTGAC
  R
  GAGTCCTGAT GCACCACTGA CCCAGAGTAC ACAGAAAGAT GGACATAGAG AATGAGACAC
  GCTTTTCTCT CAACAGAAAG GTTCTCTCAG TCGGCGGAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517799	NES08868737	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264468					SNP	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517799	NES08868737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175143 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	106 bp upstream
Tssr745	transcription start site region 745	149 bp upstream
Tssr746	transcription start site region 746	160 bp upstream
Tssr747	transcription start site region 747	173 bp downstream
Tssr748	transcription start site region 748	194 bp upstream
Tssr749	transcription start site region 749	226 bp upstream
Tssr750	transcription start site region 750	239 bp upstream
Tssr751	transcription start site region 751	293 bp upstream
Tssr752	transcription start site region 752	362 bp upstream
Tssr753	transcription start site region 753	369 bp upstream
Tssr754	transcription start site region 754	1041 bp upstream
Tssr21562	transcription start site region 21562	487 bp downstream
Tssr21563	transcription start site region 21563	478 bp downstream
Tssr21564	transcription start site region 21564	447 bp downstream
Tssr21565	transcription start site region 21565	434 bp downstream
Tssr21566	transcription start site region 21566	423 bp downstream
Tssr21567	transcription start site region 21567	411 bp downstream
Tssr21568	transcription start site region 21568	402 bp downstream
Tssr21569	transcription start site region 21569	72 bp upstream
Tssr21570	transcription start site region 21570	134 bp upstream
Tssr21571	transcription start site region 21571	165 bp upstream
Tssr21572	transcription start site region 21572	182 bp upstream
Tssr21573	transcription start site region 21573	211 bp upstream
Tssr21574	transcription start site region 21574	275 bp upstream
Tssr21575	transcription start site region 21575	1053 bp upstream
Tssr21576	transcription start site region 21576	1069 bp upstream
Tssr21577	transcription start site region 21577	1088 bp upstream
Tssr27433	transcription start site region 27433	130 bp downstream
Tssr27434	transcription start site region 27434	153 bp downstream
Tssr27435	transcription start site region 27435	181 bp downstream
Tssr27436	transcription start site region 27436	200 bp downstream
Tssr27437	transcription start site region 27437	221 bp downstream
Tssr27438	transcription start site region 27438	251 bp downstream
Tssr27439	transcription start site region 27439	265 bp downstream
Tssr27440	transcription start site region 27440	275 bp downstream
Tssr27441	transcription start site region 27441	330 bp downstream
Tssr27442	transcription start site region 27442	338 bp downstream
Tssr27443	transcription start site region 27443	401 bp downstream
Tssr27444	transcription start site region 27444	410 bp downstream
Tssr27445	transcription start site region 27445	1026 bp downstream
Tssr27446	transcription start site region 27446	1070 bp downstream
Tssr27447	transcription start site region 27447	1165 bp downstream
Tssr27448	transcription start site region 27448	1779 bp downstream