rs28264470 SNP Detail

Summary

• ID
  rs28264470
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGAATGC TATCTCCCCA GAGCTTCTAG CCTTCAAGAC
  TTAAACCAGA ACCTTACCTT GAATACTTGT GACTTGACAA GCAAATTGTT GGTAGCAAAT
  S
  GTTGAGGGCT GAGGGGGAAT GTTAGCATCT GTATCAGGTA GCATCCTCAT TGTCAGGTGT
  GAAGGGCTGT TTGACAAGTA GATCACTGCA ATTTCTAACT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37517801	NES08868734	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28264470					SNP	G	G	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517801	NES08868734	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174946 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	303 bp upstream
Tssr745	transcription start site region 745	346 bp upstream
Tssr746	transcription start site region 746	357 bp upstream
Tssr747	transcription start site region 747	370 bp downstream
Tssr748	transcription start site region 748	391 bp upstream
Tssr749	transcription start site region 749	423 bp upstream
Tssr750	transcription start site region 750	436 bp upstream
Tssr751	transcription start site region 751	490 bp upstream
Tssr752	transcription start site region 752	559 bp upstream
Tssr753	transcription start site region 753	566 bp upstream
Tssr754	transcription start site region 754	1238 bp upstream
Tssr21562	transcription start site region 21562	290 bp downstream
Tssr21563	transcription start site region 21563	281 bp downstream
Tssr21564	transcription start site region 21564	250 bp downstream
Tssr21565	transcription start site region 21565	237 bp downstream
Tssr21566	transcription start site region 21566	226 bp downstream
Tssr21567	transcription start site region 21567	214 bp downstream
Tssr21568	transcription start site region 21568	205 bp downstream
Tssr21569	transcription start site region 21569	269 bp upstream
Tssr21570	transcription start site region 21570	331 bp upstream
Tssr21571	transcription start site region 21571	362 bp upstream
Tssr21572	transcription start site region 21572	379 bp upstream
Tssr21573	transcription start site region 21573	408 bp upstream
Tssr21574	transcription start site region 21574	472 bp upstream
Tssr21575	transcription start site region 21575	1250 bp upstream
Tssr21576	transcription start site region 21576	1266 bp upstream
Tssr21577	transcription start site region 21577	1285 bp upstream
Tssr27433	transcription start site region 27433	327 bp downstream
Tssr27434	transcription start site region 27434	350 bp downstream
Tssr27435	transcription start site region 27435	378 bp downstream
Tssr27436	transcription start site region 27436	397 bp downstream
Tssr27437	transcription start site region 27437	418 bp downstream
Tssr27438	transcription start site region 27438	448 bp downstream
Tssr27439	transcription start site region 27439	462 bp downstream
Tssr27440	transcription start site region 27440	472 bp downstream
Tssr27441	transcription start site region 27441	527 bp downstream
Tssr27442	transcription start site region 27442	535 bp downstream
Tssr27443	transcription start site region 27443	598 bp downstream
Tssr27444	transcription start site region 27444	607 bp downstream
Tssr27445	transcription start site region 27445	1223 bp downstream
Tssr27446	transcription start site region 27446	1267 bp downstream
Tssr27447	transcription start site region 27447	1362 bp downstream
Tssr27448	transcription start site region 27448	1976 bp downstream