rs28264471 SNP Detail

Summary

• ID
  rs28264471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC CAGAACCTTA CCTTGAATAC
  Y
  TGTGACTTGA CAAGCAAATT GTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517802	NES08868733	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	T	C
ss148223079	ENSMUSSNP4887631	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264471					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517802	NES08868733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174912 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	337 bp upstream
Tssr745	transcription start site region 745	380 bp upstream
Tssr746	transcription start site region 746	391 bp upstream
Tssr747	transcription start site region 747	404 bp downstream
Tssr748	transcription start site region 748	425 bp upstream
Tssr749	transcription start site region 749	457 bp upstream
Tssr750	transcription start site region 750	470 bp upstream
Tssr751	transcription start site region 751	524 bp upstream
Tssr752	transcription start site region 752	593 bp upstream
Tssr753	transcription start site region 753	600 bp upstream
Tssr754	transcription start site region 754	1272 bp upstream
Tssr21562	transcription start site region 21562	256 bp downstream
Tssr21563	transcription start site region 21563	247 bp downstream
Tssr21564	transcription start site region 21564	216 bp downstream
Tssr21565	transcription start site region 21565	203 bp downstream
Tssr21566	transcription start site region 21566	192 bp downstream
Tssr21567	transcription start site region 21567	180 bp downstream
Tssr21568	transcription start site region 21568	171 bp downstream
Tssr21569	transcription start site region 21569	303 bp upstream
Tssr21570	transcription start site region 21570	365 bp upstream
Tssr21571	transcription start site region 21571	396 bp upstream
Tssr21572	transcription start site region 21572	413 bp upstream
Tssr21573	transcription start site region 21573	442 bp upstream
Tssr21574	transcription start site region 21574	506 bp upstream
Tssr21575	transcription start site region 21575	1284 bp upstream
Tssr21576	transcription start site region 21576	1300 bp upstream
Tssr21577	transcription start site region 21577	1319 bp upstream
Tssr27433	transcription start site region 27433	361 bp downstream
Tssr27434	transcription start site region 27434	384 bp downstream
Tssr27435	transcription start site region 27435	412 bp downstream
Tssr27436	transcription start site region 27436	431 bp downstream
Tssr27437	transcription start site region 27437	452 bp downstream
Tssr27438	transcription start site region 27438	482 bp downstream
Tssr27439	transcription start site region 27439	496 bp downstream
Tssr27440	transcription start site region 27440	506 bp downstream
Tssr27441	transcription start site region 27441	561 bp downstream
Tssr27442	transcription start site region 27442	569 bp downstream
Tssr27443	transcription start site region 27443	632 bp downstream
Tssr27444	transcription start site region 27444	641 bp downstream
Tssr27445	transcription start site region 27445	1257 bp downstream
Tssr27446	transcription start site region 27446	1301 bp downstream
Tssr27447	transcription start site region 27447	1396 bp downstream