rs28264472 SNP Detail

Summary

• ID
  rs28264472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCAAGAT GAGTCCCACC AGCTTCTTCC TCCTTACATT
  GCTCCTCGTT CTGGTGACAG AAGCAAGGGG AGCCCGTGGT GAGTGGCAAT TTCGTTCTGT
  R
  GGAAAGATGT TTGAGAACAA TGTTCTCAAA AGGGTCTGCC CAGAGTCTGC AGAATGCTAT
  CTCCCCAGAG CTTCTAGCCT TCAAGACTTA AACCAGAACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517803	NES08868732	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264472					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517803	NES08868732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174798 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	451 bp upstream
Tssr745	transcription start site region 745	494 bp upstream
Tssr746	transcription start site region 746	505 bp upstream
Tssr747	transcription start site region 747	518 bp downstream
Tssr748	transcription start site region 748	539 bp upstream
Tssr749	transcription start site region 749	571 bp upstream
Tssr750	transcription start site region 750	584 bp upstream
Tssr751	transcription start site region 751	638 bp upstream
Tssr752	transcription start site region 752	707 bp upstream
Tssr753	transcription start site region 753	714 bp upstream
Tssr754	transcription start site region 754	1386 bp upstream
Tssr21562	transcription start site region 21562	142 bp downstream
Tssr21563	transcription start site region 21563	133 bp downstream
Tssr21564	transcription start site region 21564	102 bp downstream
Tssr21565	transcription start site region 21565	89 bp downstream
Tssr21566	transcription start site region 21566	78 bp downstream
Tssr21567	transcription start site region 21567	66 bp downstream
Tssr21568	transcription start site region 21568	57 bp downstream
Tssr21569	transcription start site region 21569	417 bp upstream
Tssr21570	transcription start site region 21570	479 bp upstream
Tssr21571	transcription start site region 21571	510 bp upstream
Tssr21572	transcription start site region 21572	527 bp upstream
Tssr21573	transcription start site region 21573	556 bp upstream
Tssr21574	transcription start site region 21574	620 bp upstream
Tssr21575	transcription start site region 21575	1398 bp upstream
Tssr21576	transcription start site region 21576	1414 bp upstream
Tssr21577	transcription start site region 21577	1433 bp upstream
Tssr27433	transcription start site region 27433	475 bp downstream
Tssr27434	transcription start site region 27434	498 bp downstream
Tssr27435	transcription start site region 27435	526 bp downstream
Tssr27436	transcription start site region 27436	545 bp downstream
Tssr27437	transcription start site region 27437	566 bp downstream
Tssr27438	transcription start site region 27438	596 bp downstream
Tssr27439	transcription start site region 27439	610 bp downstream
Tssr27440	transcription start site region 27440	620 bp downstream
Tssr27441	transcription start site region 27441	675 bp downstream
Tssr27442	transcription start site region 27442	683 bp downstream
Tssr27443	transcription start site region 27443	746 bp downstream
Tssr27444	transcription start site region 27444	755 bp downstream
Tssr27445	transcription start site region 27445	1371 bp downstream
Tssr27446	transcription start site region 27446	1415 bp downstream
Tssr27447	transcription start site region 27447	1510 bp downstream