rs28264473 SNP Detail

Summary

• ID
  rs28264473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCTGCAG GCAAGGCCAG GCAAGGAAAT ATATAAAGGA
  GAATCTTAGC TCCACTCTCA GCCAAGCCCT TCCTGGCAAG ATGAGTCCCA CCAGCTTCTT
  Y
  CTCCTTACAT TGCTCCTCGT TCTGGTGACA GAAGCAAGGG GAGCCCGTGG TGAGTGGCAA
  TTTCGTTCTG TAGGAAAGAT GTTTGAGAAC AATGTTCTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517804	NES08868731	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264473					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517804	NES08868731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174726 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	523 bp upstream
Tssr745	transcription start site region 745	566 bp upstream
Tssr746	transcription start site region 746	577 bp upstream
Tssr747	transcription start site region 747	590 bp downstream
Tssr748	transcription start site region 748	611 bp upstream
Tssr749	transcription start site region 749	643 bp upstream
Tssr750	transcription start site region 750	656 bp upstream
Tssr751	transcription start site region 751	710 bp upstream
Tssr752	transcription start site region 752	779 bp upstream
Tssr753	transcription start site region 753	786 bp upstream
Tssr754	transcription start site region 754	1458 bp upstream
Tssr21562	transcription start site region 21562	70 bp downstream
Tssr21563	transcription start site region 21563	61 bp downstream
Tssr21564	transcription start site region 21564	30 bp downstream
Tssr21565	transcription start site region 21565	17 bp downstream
Tssr21566	transcription start site region 21566	6 bp downstream
Tssr21567	transcription start site region 21567	2 bp upstream
Tssr21568	transcription start site region 21568	12 bp upstream
Tssr21569	transcription start site region 21569	489 bp upstream
Tssr21570	transcription start site region 21570	551 bp upstream
Tssr21571	transcription start site region 21571	582 bp upstream
Tssr21572	transcription start site region 21572	599 bp upstream
Tssr21573	transcription start site region 21573	628 bp upstream
Tssr21574	transcription start site region 21574	692 bp upstream
Tssr21575	transcription start site region 21575	1470 bp upstream
Tssr21576	transcription start site region 21576	1486 bp upstream
Tssr21577	transcription start site region 21577	1505 bp upstream
Tssr27433	transcription start site region 27433	547 bp downstream
Tssr27434	transcription start site region 27434	570 bp downstream
Tssr27435	transcription start site region 27435	598 bp downstream
Tssr27436	transcription start site region 27436	617 bp downstream
Tssr27437	transcription start site region 27437	638 bp downstream
Tssr27438	transcription start site region 27438	668 bp downstream
Tssr27439	transcription start site region 27439	682 bp downstream
Tssr27440	transcription start site region 27440	692 bp downstream
Tssr27441	transcription start site region 27441	747 bp downstream
Tssr27442	transcription start site region 27442	755 bp downstream
Tssr27443	transcription start site region 27443	818 bp downstream
Tssr27444	transcription start site region 27444	827 bp downstream
Tssr27445	transcription start site region 27445	1443 bp downstream
Tssr27446	transcription start site region 27446	1487 bp downstream
Tssr27447	transcription start site region 27447	1582 bp downstream