rs28264474 SNP Detail

Summary

• ID
  rs28264474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTTGGAG AGGTCCAGGG AACAGTACCA AGACTCCTAC
  TGAGCAGGGA GAGGAAAGCT GGCATTTGCT GATAAGAAAG GTCGTCTGCC TTCAAACCTG
  M
  AGGCAAGGCC AGGCAAGGAA ATATATAAAG GAGAATCTTA GCTCCACTCT CAGCCAAGCC
  CTTCCTGGCA AGATGAGTCC CACCAGCTTC TTCCTCCTTA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37517805	NES08868730	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28264474					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517805	NES08868730	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174633 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	52 bp upstream
Tssr744	transcription start site region 744	616 bp upstream
Tssr745	transcription start site region 745	659 bp upstream
Tssr746	transcription start site region 746	670 bp upstream
Tssr747	transcription start site region 747	683 bp downstream
Tssr748	transcription start site region 748	704 bp upstream
Tssr749	transcription start site region 749	736 bp upstream
Tssr750	transcription start site region 750	749 bp upstream
Tssr751	transcription start site region 751	803 bp upstream
Tssr752	transcription start site region 752	872 bp upstream
Tssr753	transcription start site region 753	879 bp upstream
Tssr754	transcription start site region 754	1551 bp upstream
Tssr21562	transcription start site region 21562	10 bp upstream
Tssr21563	transcription start site region 21563	27 bp upstream
Tssr21564	transcription start site region 21564	46 bp upstream
Tssr21565	transcription start site region 21565	71 bp upstream
Tssr21566	transcription start site region 21566	81 bp upstream
Tssr21567	transcription start site region 21567	95 bp upstream
Tssr21568	transcription start site region 21568	105 bp upstream
Tssr21569	transcription start site region 21569	582 bp upstream
Tssr21570	transcription start site region 21570	644 bp upstream
Tssr21571	transcription start site region 21571	675 bp upstream
Tssr21572	transcription start site region 21572	692 bp upstream
Tssr21573	transcription start site region 21573	721 bp upstream
Tssr21574	transcription start site region 21574	785 bp upstream
Tssr21575	transcription start site region 21575	1563 bp upstream
Tssr21576	transcription start site region 21576	1579 bp upstream
Tssr21577	transcription start site region 21577	1598 bp upstream
Tssr27433	transcription start site region 27433	640 bp downstream
Tssr27434	transcription start site region 27434	663 bp downstream
Tssr27435	transcription start site region 27435	691 bp downstream
Tssr27436	transcription start site region 27436	710 bp downstream
Tssr27437	transcription start site region 27437	731 bp downstream
Tssr27438	transcription start site region 27438	761 bp downstream
Tssr27439	transcription start site region 27439	775 bp downstream
Tssr27440	transcription start site region 27440	785 bp downstream
Tssr27441	transcription start site region 27441	840 bp downstream
Tssr27442	transcription start site region 27442	848 bp downstream
Tssr27443	transcription start site region 27443	911 bp downstream
Tssr27444	transcription start site region 27444	920 bp downstream
Tssr27445	transcription start site region 27445	1536 bp downstream
Tssr27446	transcription start site region 27446	1580 bp downstream
Tssr27447	transcription start site region 27447	1675 bp downstream