rs28264640 SNP Detail

Summary

• ID
  rs28264640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164131844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGACAAGT TTAAAGGAAG ACATAGTTTG
  TGAAGAAGAA GATGAGCTTG CCCAACAAAA ATCCCAGCTG CCATCCCAGT CACAAATAAA
  ATCCCAAACT CAAGTAAAAT CCTACGCAGC CCAACTGAAG TCCCAACCAG GCCAGCTAAA
  R
  ACCATAGGGC AGGTGAAGTC ACAAACCATG CTGAAATCCC ACGGAGCCCC TCTGAAGTCC
  TTCAAAGCAC GCCTTAATCT GCGAGAAGAC ATTCCTCAGC AAGTCAAGGG CAGAGGATAT
  GGCCTGGCTG AAGACCTGGC CCAAGTGCGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37517973	NES08869498	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	G		G	A	G		G
ss148221547	ENSMUSSNP2111401	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320605232	CHEV_2_164115660	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28264640					SNP	G	A	A	A	A	A	G	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517973	NES08869498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164131844 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	within coordinates
Tssr740	transcription start site region 740	331 bp downstream
Tssr741	transcription start site region 741	162 bp downstream
Tssr742	transcription start site region 742	350 bp upstream
Tssr21553	transcription start site region 21553	717 bp downstream
Tssr21554	transcription start site region 21554	697 bp downstream
Tssr21555	transcription start site region 21555	651 bp downstream
Tssr21556	transcription start site region 21556	304 bp downstream