rs28264648 SNP Detail

Summary

• ID
  rs28264648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164131191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA GATCAGCTGA GGTCTCAGTG
  R
  AGGCCCTTCC TGGTAAGATG AAGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37517981	NES08869486	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	G	A	A
ss45255454	mCV23737254	ABI	CRAMUS_MOUSE	f	SNP			A					G
ss148221525	ENSMUSSNP476886	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28264648					SNP	G	G	A	A	A	A	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517981	NES08869486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164131191 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	within coordinates
Tssr740	transcription start site region 740	317 bp upstream
Tssr741	transcription start site region 741	482 bp upstream
Tssr742	transcription start site region 742	1003 bp upstream
Tssr21553	transcription start site region 21553	64 bp downstream
Tssr21554	transcription start site region 21554	44 bp downstream
Tssr21555	transcription start site region 21555	within coordinates
Tssr21556	transcription start site region 21556	338 bp upstream