rs28264656 SNP Detail

Summary

• ID
  rs28264656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164130540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAGGAG TTTTCGCTCA
  TTAAGCAGGT AATGGGGAGT TTAGGTGATT TCAGGAAAAT CATGAAATAA GGAAGCCAGT
  TTCCTTTCTC CACGTATCAA CAGTCAAACA TGGTTTCCAG CCAAAGATGG TAAATTTCTT
  CCATACCTGA AAATCCCTTG GCAGCTCCCC TCATTCTTGA GATGCAGACA CAAGGCTGAC
  Y
  CTACTGAATA CAGAGACGAC AAAGCCCTCT TGAGCACGTC TCTCCTGCTC TCCTACCAGG
  ATATGGGGGC ACTCTGAGAA TGTCATCAAA GCTACTAGTG ACAGGAAACC CTGGGGGAGT
  CTCACACAGA TCAATAGTAA GGTTAGAAAT TTTAGAGTTA CTTGTATGCA GGTAAACCTC
  GGTTATTTTT AAAATTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37517989	NES08869466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28264656					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517989	NES08869466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164130540 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	648 bp upstream
Tssr740	transcription start site region 740	968 bp upstream
Tssr741	transcription start site region 741	1133 bp upstream
Tssr742	transcription start site region 742	1654 bp upstream
Tssr21553	transcription start site region 21553	577 bp upstream
Tssr21554	transcription start site region 21554	596 bp upstream
Tssr21555	transcription start site region 21555	641 bp upstream
Tssr21556	transcription start site region 21556	989 bp upstream