rs28264657 SNP Detail

Summary

• ID
  rs28264657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164130513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGACTGG TGGAAGGGTT
  TCTCATCTGC TAAGGAGTTT TCGCTCATTA AGCAGGTAAT GGGGAGTTTA GGTGATTTCA
  GGAAAATCAT GAAATAAGGA AGCCAGTTTC CTTTCTCCAC GTATCAACAG TCAAACATGG
  TTTCCAGCCA AAGATGGTAA ATTTCTTCCA TACCTGAAAA TCCCTTGGCA GCTCCCCTCA
  Y
  TCTTGAGATG CAGACACAAG GCTGACCCTA CTGAATACAG AGACGACAAA GCCCTCTTGA
  GCACGTCTCT CCTGCTCTCC TACCAGGATA TGGGGGCACT CTGAGAATGT CATCAAAGCT
  ACTAGTGACA GGAAACCCTG GGGGAGTCTC ACACAGATCA ATAGTAAGGT TAGAAATTTT
  AGAGTTACTT GTATGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37517990	NES08869464	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28264657					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517990	NES08869464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164130513 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	675 bp upstream
Tssr740	transcription start site region 740	995 bp upstream
Tssr741	transcription start site region 741	1160 bp upstream
Tssr742	transcription start site region 742	1681 bp upstream
Tssr21553	transcription start site region 21553	604 bp upstream
Tssr21554	transcription start site region 21554	623 bp upstream
Tssr21555	transcription start site region 21555	668 bp upstream
Tssr21556	transcription start site region 21556	1016 bp upstream