rs28264664 SNP Detail

Summary

• ID
  rs28264664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164130306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCAGGG CTGGGCTGGG
  TGCATGCAGA GATGCCTGAT GGTCTGCATG GGAAAGCTGA GGCCTGCCTT ATGGACCACT
  CAGGGTCTTC TCACAGATGC AGGAAATGTC ATGTTTCCAG GAAGTGGACA GGCTCCCACT
  GCATCCAGTC TCAGTATATT CCCAACACAC TTCTACTAAC ACATGCACCA GGGAGGGCAG
  W
  CATAAGCAGG GACTGGTGGA AGGGTTTCTC ATCTGCTAAG GAGTTTTCGC TCATTAAGCA
  GGTAATGGGG AGTTTAGGTG ATTTCAGGAA AATCATGAAA TAAGGAAGCC AGTTTCCTTT
  CTCCACGTAT CAACAGTCAA ACATGGTTTC CAGCCAAAGA TGGTAAATTT CTTCCATACC
  TGAAAATCCC TTGGCAGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37517997	NES08869451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28264664					SNP	T	T	T	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517997	NES08869451	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164130306 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	882 bp upstream
Tssr740	transcription start site region 740	1202 bp upstream
Tssr741	transcription start site region 741	1367 bp upstream
Tssr742	transcription start site region 742	1888 bp upstream
Tssr21553	transcription start site region 21553	811 bp upstream
Tssr21554	transcription start site region 21554	830 bp upstream
Tssr21555	transcription start site region 21555	875 bp upstream
Tssr21556	transcription start site region 21556	1223 bp upstream