rs28264666 SNP Detail

Summary

• ID
  rs28264666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164130256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA GGCTCCCACT GCATCCAGTC
  Y
  CAGTATATTC CCAACACACT TCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37517999	NES08869449	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	T	C	T		T	C		T
ss148221510	ENSMUSSNP5916024	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320605229	CHEV_2_164114072	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs28264666					SNP	T	T	C	T	C	C	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517999	NES08869449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164130256 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	932 bp upstream
Tssr740	transcription start site region 740	1252 bp upstream
Tssr741	transcription start site region 741	1417 bp upstream
Tssr742	transcription start site region 742	1938 bp upstream
Tssr21553	transcription start site region 21553	861 bp upstream
Tssr21554	transcription start site region 21554	880 bp upstream
Tssr21555	transcription start site region 21555	925 bp upstream
Tssr21556	transcription start site region 21556	1273 bp upstream